.. _examples: Examples ======== This page provides a series of examples, tutorials and recipes to help you get started with ``mdtraj``. Each subsection is a notebook. To open these notebooks in a "live" Jupyter/IPython session and execute the documentation interactively, you need to download the repository and start the Jupyter notebook. If you installed `MDTraj` from source, you will need to navigate to :code:`path-to-mdtraj/examples`. The notebook files for these examples and the notebooks are available in the top level `examples folder `_ on github too. In the directory with the notebook files, start an IPython notebook server: .. code:: bash $ jupyter notebook .. warning:: The pre-filled out notebooks are far less fun than running them yourself! .. toctree:: :maxdepth: 3 :glob: introduction * Let us know if you would like to contribute other example notebooks, or have any suggestions for how these can be improved. .. vim: tw=75