mdtraj.Topology
===============

.. currentmodule:: mdtraj

.. autoclass:: Topology

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~Topology.__init__
      ~Topology.add_atom
      ~Topology.add_bond
      ~Topology.add_chain
      ~Topology.add_residue
      ~Topology.atom
      ~Topology.atoms_by_name
      ~Topology.chain
      ~Topology.copy
      ~Topology.create_disulfide_bonds
      ~Topology.create_standard_bonds
      ~Topology.delete_atom_by_index
      ~Topology.find_molecules
      ~Topology.from_dataframe
      ~Topology.from_openmm
      ~Topology.guess_anchor_molecules
      ~Topology.insert_atom
      ~Topology.join
      ~Topology.residue
      ~Topology.select
      ~Topology.select_atom_indices
      ~Topology.select_expression
      ~Topology.select_pairs
      ~Topology.subset
      ~Topology.to_bondgraph
      ~Topology.to_dataframe
      ~Topology.to_fasta
      ~Topology.to_openmm
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~Topology.atoms
      ~Topology.bonds
      ~Topology.chains
      ~Topology.n_atoms
      ~Topology.n_bonds
      ~Topology.n_chains
      ~Topology.n_residues
      ~Topology.residues