mdtraj\.Topology ================ .. currentmodule:: mdtraj .. autoclass:: Topology .. automethod:: __init__ .. rubric:: Methods .. autosummary:: ~Topology.__init__ ~Topology.add_atom ~Topology.add_bond ~Topology.add_chain ~Topology.add_residue ~Topology.atom ~Topology.atoms_by_name ~Topology.chain ~Topology.copy ~Topology.create_disulfide_bonds ~Topology.create_standard_bonds ~Topology.find_molecules ~Topology.from_dataframe ~Topology.from_openmm ~Topology.guess_anchor_molecules ~Topology.join ~Topology.residue ~Topology.select ~Topology.select_atom_indices ~Topology.select_expression ~Topology.select_pairs ~Topology.subset ~Topology.to_bondgraph ~Topology.to_dataframe ~Topology.to_fasta ~Topology.to_openmm